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Methods in Molecular Biology (Clifton, N.J.)|September 26, 2016
Predicting RNA-RNA Interactions Using RNAstructureLaura DiChiacchio, David H MathewsRNA (New York, N.Y.)|August 12, 2010
ProbKnot: fast prediction of RNA secondary structure including pseudoknotsStanislav Bellaousov, David H MathewsBiorxiv : the Preprint Server for Biology|August 6, 2025
AlignmentFold and AlignmentPartition: Improving the align-then-fold approach for RNA secondary structure predictionAbhinav Mittal, David H MathewsMethods in Molecular Biology (Clifton, N.J.)|May 23, 2024
Estimating RNA Secondary Structure Folding Free Energy Changes with efn2Jeffrey Zuber, David H MathewsProteins|November 9, 2010
Estimating binding affinities by docking/scoring methods using variable protonation statesMin-Sun Park, Cen Gao, Harry A SternProteins|November 11, 2010
Conformational flexibility and binding interactions of the G protein βγ heterodimerMin-Sun Park, Alan V Smrcka, Harry A SternCurrent Opinion in Structural Biology|May 23, 2006
Prediction of RNA secondary structure by free energy minimizationDavid H Mathews, Douglas H TurnerMethods in Molecular Biology (Clifton, N.J.)|September 26, 2016
Prediction of Secondary Structures Conserved in Multiple RNA SequencesZhenjiang Zech Xu, David H MathewsCurrent Protocols in Nucleic Acid Chemistry|April 23, 2008
Use of chemical modification to elucidate RNA folding pathwaysDavid H Mathews, Douglas H TurnerNucleic Acids Research|December 13, 2007
Efficient siRNA selection using hybridization thermodynamicsZhi John Lu, David H MathewsPageof 20