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Cold Spring Harbor Perspectives in Biology|August 6, 2010
Folding and finding RNA secondary structureDavid H Mathews, Walter N Moss, Douglas H TurnerCurrent Protocols in Nucleic Acid Chemistry|December 3, 2016
RNA Secondary Structure PredictionDavid H Mathews, Douglas H Turner, Richard M WatsonNucleic Acids Research|October 17, 2017
TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologsZhen Tan, Yinghan Fu, Gaurav Sharma, et al.Nucleic Acids Research|June 7, 2017
Advanced multi-loop algorithms for RNA secondary structure prediction reveal that the simplest model is bestMax Ward, Amitava Datta, Michael Wise, et al.RNA (New York, N.Y.)|August 26, 2009
Improved RNA secondary structure prediction by maximizing expected pair accuracyZhi John Lu, Jason W Gloor, David H MathewsJournal of the American Chemical Society|November 6, 2012
Controlled oxidation of remote sp3 C-H bonds in artemisinin via P450 catalysts with fine-tuned regio- and stereoselectivityKaidong Zhang, Brian M Shafer, Matthew D Demars, et al.STAR Protocols|October 1, 2022
Protocol to use TopNet for gene regulatory network modeling using gene expression data from perturbation experimentsHelene R McMurray, Harry A Stern, Aslihan Ambeskovic, et al.Microorganisms|August 26, 2023
Genome-Wide DNA Changes Acquired by Candida albicans Caspofungin-Adapted MutantsJeffrey Zuber, Sudisht K Sah, David H Mathews, et al.Methods in Molecular Biology (Clifton, N.J.)|March 19, 2014
The determination of RNA folding nearest neighbor parametersMirela Andronescu, Anne Condon, Douglas H Turner, et al.RNA (New York, N.Y.)|August 12, 2018
Accelerated RNA secondary structure design using preselected sequences for helices and loopsStanislav Bellaousov, Mohammad Kayedkhordeh, Raymond J Peterson, et al.Pageof 20