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Bioinformatics (Oxford, England)|May 2, 2017
RIblast: an ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approachTsukasa Fukunaga, Michiaki HamadaGenes|September 30, 2020
Parallelized Latent Dirichlet Allocation Provides a Novel Interpretability of Mutation Signatures in Cancer GenomesTaro Matsutani, Michiaki HamadaBMC Bioinformatics|November 16, 2021
Multi-resBind: a residual network-based multi-label classifier for in vivo RNA binding prediction and preference visualizationShitao Zhao, Michiaki HamadaMethods in Molecular Biology (Clifton, N.J.)|January 27, 2023
Fast RNA-RNA Interaction Prediction Methods for Interaction Analysis of Transcriptome-Scale Large DatasetsTsukasa Fukunaga, Michiaki HamadaBMC Genomics|January 2, 2019
Identifying sequence features that drive ribosomal association for lncRNAChao Zeng, Michiaki HamadaMethods in Molecular Biology (Clifton, N.J.)|December 16, 2020
Detection and Characterization of Ribosome-Associated Long Noncoding RNAsChao Zeng, Michiaki HamadaJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|July 3, 2018
A Novel Method for Assessing the Statistical Significance of RNA-RNA Interactions Between Two Long RNAsTsukasa Fukunaga, Michiaki HamadaBMC Bioinformatics|June 30, 2018
MICOP: Maximal information coefficient-based oscillation prediction to detect biological rhythms in proteomics dataHitoshi Iuchi, Masahiro Sugimoto, Masaru TomitaBioinformatics (Oxford, England)|September 25, 2020
PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scoresYukiteru Ono, Kiyoshi Asai, Michiaki HamadaNAR Genomics and Bioinformatics|December 5, 2022
PBSIM3: a simulator for all types of PacBio and ONT long readsYukiteru Ono, Michiaki Hamada, Kiyoshi AsaiPageof 13