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Scientific Reports|May 13, 2022
Direct RNA targeted in situ sequencing for transcriptomic profiling in tissueHower Lee, Sergio Marco Salas, Daniel Gyllborg, et al.
BMC Bioinformatics|August 1, 2021
Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression mapsSergio Marco Salas, Daniel Gyllborg, Christoffer Mattsson Langseth, et al.
Nucleic Acids Research|September 29, 2020
Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissueDaniel Gyllborg, Christoffer Mattsson Langseth, Xiaoyan Qian, et al.
Methods in Molecular Biology (Clifton, N.J.)|May 13, 2020
In Situ Sequencing: A High-Throughput, Multi-Targeted Gene Expression Profiling Technique for Cell Typing in Tissue SectionsMarkus M Hilscher, Daniel Gyllborg, Chika Yokota, et al.
Plos Computational Biology|August 12, 2022
De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networksSergio Marco Salas, Xiao Yuan, Christer Sylven, et al.
Development (Cambridge, England)|August 5, 2024
Open-source, high-throughput targeted in situ transcriptomics for developmental and tissue biologyHower Lee, Christoffer Mattsson Langseth, Sergio Marco Salas, et al.
Annual Review of Genomics and Human Genetics|April 5, 2023
Padlock Probe-Based Targeted In Situ Sequencing: Overview of Methods and ApplicationsAnastasia Magoulopoulou, Sergio Marco Salas, Katarína Tiklová, et al.
Frontiers in Immunology|June 6, 2022
Spatial Resolution of Mycobacterium tuberculosis Bacteria and Their Surrounding Immune Environments Based on Selected Key Transcripts in Mouse LungsAnastasia Magoulopoulou, Xiaoyan Qian, Todia Pediatama Setiabudiawan, et al.
Communications Biology|August 25, 2021
Comprehensive in situ mapping of human cortical transcriptomic cell typesChristoffer Mattsson Langseth, Daniel Gyllborg, Jeremy A Miller, et al.
RSC Advances|April 13, 2026
Microfluidic toolbox using padlock probes and rolling circle amplification for direct detection and genotyping of viral RNAJoão C Varela, Priscilla Gomes da Silva, Hower Lee, et al.
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