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BMC Bioinformatics|June 11, 2021
PPalign: optimal alignment of Potts models representing proteins with direct coupling informationHugo Talibart, François CostePeerj|March 29, 2019
Estimating probabilistic context-free grammars for proteins using contact map constraintsWitold Dyrka, Mateusz Pyzik, François Coste, et al.Journal of Cheminformatics|June 17, 2026
Learning a chemistry-aware latent space for molecular encoding and generation with a large-scale transformer variational autoencoderHugo Talibart, Dimitri GilisBMC Bioinformatics|August 14, 2015
Amplitude spectrum distance: measuring the global shape divergence of protein fragmentsClovis Galiez, François CosteBioinformatics (Oxford, England)|October 24, 2023
Predicting enzymatic function of protein sequences with attentionNicolas Buton, François Coste, Yann Le CunffPlos Computational Biology|August 31, 2023
Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL familyOlivier Dennler, François Coste, Samuel Blanquart, et al.Bioinformatics (Oxford, England)|August 28, 2025
FUSE-PhyloTree: Linking functions and sequence conservation modules of a protein family through phylogenomic analysisOlivier Dennler, Elisa Chenel, François Coste, et al.Nucleic Acids Research|November 24, 2012
CyanoLyase: a database of phycobilin lyase sequences, motifs and functionsAnthony Bretaudeau, François Coste, Florian Humily, et al.Journal of Medical Virology|September 10, 2010
Low frequency of cytomegalovirus infection during exacerbations of inflammatory bowel diseasesNicolas Lévêque, Hedia Brixi-Benmansour, Thierry Reig, et al.Scientific Reports|May 23, 2020
Extracellular vesicles produced by human and animal Staphylococcus aureus strains share a highly conserved core proteomeNatayme Rocha Tartaglia, Aurélie Nicolas, Vinícius de Rezende Rodovalho, et al.Pageof 2