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Plos Computational Biology|March 4, 2016
Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic InferenceMichael D Karcher, Julia A Palacios, Trevor Bedford, et al.
Plos Computational Biology|October 12, 2020
Estimating effective population size changes from preferentially sampled genetic sequencesMichael D Karcher, Luiz Max Carvalho, Marc A Suchard, et al.
Molecular Biology and Evolution|November 11, 2023
Shrinkage-based Random Local Clocks with Scalable InferenceAlexander A Fisher, Xiang Ji, Akihiko Nishimura, et al.
Statistical Analysis and Data Mining|May 16, 2017
Hierarchical Models for Multiple, Rare Outcomes Using Massive Observational Healthcare DatabasesTrevor R Shaddox, Patrick B Ryan, Martijn J Schuemie, et al.
Molecular Biology and Evolution|March 10, 2012
Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertaintyGuy Baele, Philippe Lemey, Trevor Bedford, et al.
Proceedings of the National Academy of Sciences of the United States of America|July 3, 2004
Alterations in the dynamics of circulating ghrelin, adiponectin, and leptin in human obesityBulent O Yildiz, Marc A Suchard, Ma-Li Wong, et al.
Bioinformatics (Oxford, England)|October 16, 2012
A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selectionPhilippe Lemey, Vladimir N Minin, Filip Bielejec, et al.
Systematic Biology|November 1, 2016
A Relaxed Directional Random Walk Model for Phylogenetic Trait EvolutionMandev S Gill, Lam Si Tung Ho, Guy Baele, et al.
BMC Bioinformatics|June 3, 2014
πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenariosFilip Bielejec, Philippe Lemey, Luiz Max Carvalho, et al.
Molecular Ecology Resources|June 26, 2014
Empirical calibrated radiocarbon sampler: a tool for incorporating radiocarbon-date and calibration error into Bayesian phylogenetic analyses of ancient DNAMartyna Molak, Marc A Suchard, Simon Y W Ho, et al.
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