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Genome Biology|June 9, 2021
BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seqJohan Gustafsson, Jonathan Robinson, Jens Nielsen, et al.Bioinformatics (Oxford, England)|March 17, 2020
Interpretable factor models of single-cell RNA-seq via variational autoencodersValentine Svensson, Adam Gayoso, Nir Yosef, et al.Statistical Applications in Genetics and Molecular Biology|October 24, 2012
Determining coding CpG islands by identifying regions significant for pattern statistics on Markov chainsMeromit Singer, Alexander Engström, Alexander Schönhuth, et al.Nucleic Acids Research|May 10, 2007
Multiple whole genome alignments and novel biomedical applications at the VISTA portalMichael Brudno, Alexander Poliakov, Simon Minovitsky, et al.Journal of Biomedical Informatics|December 12, 2002
Comparative genomics approaches to study organism similarities and differencesLiping Wei, Yueyi Liu, Inna Dubchak, et al.Plos Computational Biology|September 12, 2022
RNA velocity unraveledGennady Gorin, Meichen Fang, Tara Chari, et al.Bioinformatics (Oxford, England)|June 24, 2011
Identification of novel transcripts in annotated genomes using RNA-SeqAdam Roberts, Harold Pimentel, Cole Trapnell, et al.Elife|June 14, 2018
Association mapping from sequencing reads using k-mersAtif Rahman, Ingileif Hallgrímsdóttir, Michael Eisen, et al.Cell Systems|May 15, 2017
PROBer Provides a General Toolkit for Analyzing Sequencing-Based Toeprinting AssaysBo Li, Akshay Tambe, Sharon Aviran, et al.Bioinformatics (Oxford, England)|February 28, 2004
Multiple-sequence functional annotation and the generalized hidden Markov phylogenyJon D McAuliffe, Lior Pachter, Michael I JordanPageof 27