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Plos Computational Biology|May 30, 2009
Fast statistical alignmentRobert K Bradley, Adam Roberts, Michael Smoot, et al.Nucleic Acids Research|December 10, 2024
Accurate quantification of nascent and mature RNAs from single-cell and single-nucleus RNA-seqDelaney K Sullivan, Kristján Eldjárn Hjörleifsson, Nikhila P Swarna, et al.Biorxiv : the Preprint Server for Biology|July 29, 2024
Identification of spatial homogeneous regions in tissues with concordexKayla C Jackson, A Sina Booeshaghi, Ángel Gálvez-Merchán, et al.Nature Biotechnology|April 22, 2025
Detection of viral sequences at single-cell resolution identifies novel viruses associated with host gene expression changesLaura Luebbert, Delaney K Sullivan, Maria Carilli, et al.Nucleic Acids Research|June 16, 2012
RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomicsPavel S Novichkov, Thomas S Brettin, Elena S Novichkova, et al.Nucleic Acids Research|November 4, 2009
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotesPavel S Novichkov, Olga N Laikova, Elena S Novichkova, et al.BMC Genomics|April 4, 2013
RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotesMichael J Cipriano, Pavel N Novichkov, Alexey E Kazakov, et al.Plos One|November 3, 2010
Development of a low bias method for characterizing viral populations using next generation sequencing technologyStephanie M Willerth, Hélder A M Pedro, Lior Pachter, et al.Bioinformatics (Oxford, England)|March 23, 2004
Phylo-VISTA: interactive visualization of multiple DNA sequence alignmentsNameeta Shah, Olivier Couronne, Len A Pennacchio, et al.Nucleic Acids Research|January 21, 2014
A dynamic alternative splicing program regulates gene expression during terminal erythropoiesisHarold Pimentel, Marilyn Parra, Sherry Gee, et al.Pageof 27