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Nucleic Acids Research|November 24, 2020
GTRD: an integrated view of transcription regulationSemyon Kolmykov, Ivan Yevshin, Mikhail Kulyashov, et al.
Nucleic Acids Research|November 24, 2012
HOCOMOCO: a comprehensive collection of human transcription factor binding sites modelsIvan V Kulakovskiy, Yulia A Medvedeva, Ulf Schaefer, et al.
International Journal of Molecular Sciences|February 10, 2024
Y-Box-Binding Proteins Have a Dual Impact on Cellular TranslationIrina A Eliseeva, Andrey I Buyan, Egor A Smolin, et al.
BMC Genomics|July 1, 2016
Negative selection maintains transcription factor binding motifs in human cancerIlya E Vorontsov, Grigory Khimulya, Elena N Lukianova, et al.
BMC Research Notes|October 25, 2018
Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq dataIlya E Vorontsov, Alla D Fedorova, Ivan S Yevshin, et al.
Frontiers in Genetics|November 19, 2019
What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory VariantsDmitry D Penzar, Arsenii O Zinkevich, Ilya E Vorontsov, et al.
BMC Genomics|January 30, 2014
Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq dataVictor G Levitsky, Ivan V Kulakovskiy, Nikita I Ershov, et al.
Bioinformatics (Oxford, England)|July 25, 2023
LegNet: a best-in-class deep learning model for short DNA regulatory regionsDmitry Penzar, Daria Nogina, Elizaveta Noskova, et al.
Database : the Journal of Biological Databases and Curation|July 9, 2015
EpiFactors: a comprehensive database of human epigenetic factors and complexesYulia A Medvedeva, Andreas Lennartsson, Rezvan Ehsani, et al.
BMC Genomics|February 3, 2019
CpG traffic lights are markers of regulatory regions in human genomeAnna V Lioznova, Abdullah M Khamis, Artem V Artemov, et al.
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