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Nature Microbiology|January 11, 2024
Environmental stress mediates groundwater microbial community assemblyDaliang Ning, Yajiao Wang, Yupeng Fan, et al.Science Advances|July 28, 2023
Lectin-Seq: A method to profile lectin-microbe interactions in native communitiesRobert L McPherson, Christine R Isabella, Rebecca L Walker, et al.Microbiome|April 8, 2020
Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicityRenmao Tian, Daliang Ning, Zhili He, et al.Nature Medicine|September 4, 2019
A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome researchM Poyet, M Groussin, S M Gibbons, et al.Journal of Bacteriology|May 19, 2006
Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approachAindrila Mukhopadhyay, Zhili He, Eric J Alm, et al.Nature Communications|January 22, 2026
Phosphorothioate DNA modification by BREX type 4 systems in the human gut microbiomeYifeng Yuan, Michael S DeMott, Shane R Byrne, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
Host transcriptional responses to gut microbiome variation arising from urbanismSabrina Arif, Shreya Nirmalan, Adnan Alazizi, et al.Science (New York, N.Y.)|October 11, 2008
Environmental genomics reveals a single-species ecosystem deep within EarthDylan Chivian, Eoin L Brodie, Eric J Alm, et al.Science (New York, N.Y.)|August 4, 2022
A conserved Bacteroidetes antigen induces anti-inflammatory intestinal T lymphocytesDjenet Bousbaine, Laura I Fisch, Mariya London, et al.Mbio|February 22, 2018
Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem FunctioningZhili He, Ping Zhang, Linwei Wu, et al.Pageof 25