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Current Biology : CB|April 29, 2025
Abundance measurements reveal the balance between lysis and lysogeny in the human gut microbiomeJamie Alcira Lopez, Saria McKeithen-Mead, Handuo Shi, et al.
Biorxiv : the Preprint Server for Biology|November 24, 2025
Community coalescence reveals strong selection and coexistence within species in complex microbial communitiesSophie Jean Walton, Qing Xu, Richa Sharma, et al.
Biorxiv : the Preprint Server for Biology|June 4, 2026
Path-dependent recovery of the gut microbiome after antibiotics emerges from coupled ecological and evolutionary dynamicsChinmay Lalgudi, Masakazu Kotaka, Eitan Yaffe, et al.
Biorxiv : the Preprint Server for Biology|June 12, 2025
Gut microbe-derived lactic acid optimizes host energy metabolism during starvationJason William Millington, Jamie Alcira Lopez, Amin M Sajjadian, et al.
Genome Research|July 24, 2021
Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatmentMorteza Roodgar, Benjamin H Good, Nandita R Garud, et al.
Biorxiv : the Preprint Server for Biology|December 11, 2023
Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communitiesDoran A Goldman, Katherine S Xue, Autumn B Parrott, et al.
Biorxiv : the Preprint Server for Biology|October 9, 2023
Prolonged delays in human microbiota transmission after a controlled antibiotic perturbationKatherine S Xue, Sophie Jean Walton, Doran A Goldman, et al.
Proceedings of the National Academy of Sciences of the United States of America|March 10, 2025
Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communitiesDoran A Goldman, Katherine S Xue, Autumn B Parrott, et al.
Cell Host & Microbe|September 2, 2021
Quantifying rapid bacterial evolution and transmission within the mouse intestineKimberly S Vasquez, Lisa Willis, Nate J Cira, et al.
Cell|March 11, 2025
Genome-scale resources in the infant gut symbiont Bifidobacterium breve reveal genetic determinants of colonization and host-microbe interactionsAnthony L Shiver, Jiawei Sun, Rebecca Culver, et al.
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