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Bioinformatics (Oxford, England)|December 18, 2009
RNAsnoop: efficient target prediction for H/ACA snoRNAsHakim Tafer, Stephanie Kehr, Jana Hertel, et al.Nature Biotechnology|November 8, 2005
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genomeStefan Washietl, Ivo L Hofacker, Melanie Lukasser, et al.Plos Computational Biology|April 17, 2007
Inferring noncoding RNA families and classes by means of genome-scale structure-based clusteringSebastian Will, Kristin Reiche, Ivo L Hofacker, et al.RNA (New York, N.Y.)|March 28, 2012
LocARNA-P: accurate boundary prediction and improved detection of structural RNAsSebastian Will, Tejal Joshi, Ivo L Hofacker, et al.Frontiers in Genetics|June 5, 2015
Emerging applications of read profiles towards the functional annotation of the genomeSachin Pundhir, Panayiota Poirazi, Jan GorodkinBioinformatics (Oxford, England)|August 28, 2012
RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy modelAnne Wenzel, Erdinç Akbasli, Jan GorodkinCurrent Protocols in Bioinformatics|September 6, 2012
Comparative ncRNA gene and structure prediction using Foldalign and FoldalignMJakob Havgaard, Simranjeet Kaur, Jan GorodkinPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|November 13, 2009
RNAz 2.0: improved noncoding RNA detectionAndreas R Gruber, Sven Findeiß, Stefan Washietl, et al.Plos Computational Biology|October 17, 2007
Fast pairwise structural RNA alignments by pruning of the dynamical programming matrixJakob H Havgaard, Elfar Torarinsson, Jan GorodkinNucleic Acids Research|October 7, 2008
Unifying evolutionary and thermodynamic information for RNA folding of multiple alignmentsStefan E Seemann, Jan Gorodkin, Rolf BackofenPageof 25