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RNA (New York, N.Y.)|April 7, 2019
Estimating uncertainty in predicted folding free energy changes of RNA secondary structuresJeffrey Zuber, David H Mathews
Methods in Molecular Biology (Clifton, N.J.)|May 23, 2024
Estimating RNA Secondary Structure Folding Free Energy Changes with efn2Jeffrey Zuber, David H Mathews
Microorganisms|August 26, 2023
Genome-Wide DNA Changes Acquired by Candida albicans Caspofungin-Adapted MutantsJeffrey Zuber, Sudisht K Sah, David H Mathews, et al.
Biorxiv : the Preprint Server for Biology|October 28, 2024
DecoyFinder: Identification of Contaminants in Sets of Homologous RNA SequencesMingyi Zhu, Jeffrey Zuber, Zhen Tan, et al.
Arxiv|March 31, 2025
Differentiable Folding for Nearest Neighbor Model OptimizationRyan K Krueger, Sharon Aviran, David H Mathews, et al.
Nucleic Acids Research|May 7, 2022
Nearest neighbor rules for RNA helix folding thermodynamics: improved end effectsJeffrey Zuber, Susan J Schroeder, Hongying Sun, et al.
Bioinformatics (Oxford, England)|February 26, 2005
Predicting a set of minimal free energy RNA secondary structures common to two sequencesDavid H Mathews
Current Protocols in Bioinformatics|April 23, 2008
RNA secondary structure analysis using RNAstructureDavid H Mathews
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