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Plos Computational Biology|December 4, 2020
SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomesJennifer Lu, Steven L SalzbergMicrobiome|August 30, 2020
Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2Jennifer Lu, Steven L SalzbergPlos Computational Biology|June 26, 2018
Removing contaminants from databases of draft genomesJennifer Lu, Steven L SalzbergBriefings in Bioinformatics|October 14, 2017
A review of methods and databases for metagenomic classification and assemblyFlorian P Breitwieser, Jennifer Lu, Steven L SalzbergPeerj. Computer Science|April 24, 2025
Bracken: estimating species abundance in metagenomics dataJennifer Lu, Florian P Breitwieser, Peter Thielen, et al.Science Translational Medicine|September 3, 2025
Comprehensive analysis of microbial content in whole-genome sequencing samples from The Cancer Genome Atlas projectYuchen Ge, Jennifer Lu, Daniela Puiu, et al.Biorxiv : the Preprint Server for Biology|July 29, 2024
Comprehensive analysis of microbial content in whole-genome sequencing samples from The Cancer Genome Atlas projectYuchen Ge, Jennifer Lu, Daniela Puiu, et al.Pageof 35