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Proceedings of the National Academy of Sciences of the United States of America|January 19, 2023
Physicochemical models of protein-DNA binding with standard and modified base pairsTsu-Pei Chiu, Satyanarayan Rao, Remo Rohs
Nature Communications|February 9, 2024
Predicting DNA structure using a deep learning methodJinsen Li, Tsu-Pei Chiu, Remo Rohs
Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology|May 20, 2016
How motif environment influences transcription factor search dynamics: Finding a needle in a haystackIris Dror, Remo Rohs, Yael Mandel-Gutfreund
Nucleic Acids Research|April 17, 2024
RNAscape: geometric mapping and customizable visualization of RNA structureRaktim Mitra, Ari S Cohen, Remo Rohs
Biorxiv : the Preprint Server for Biology|November 14, 2023
Deep DNAshape: Predicting DNA shape considering extended flanking regions using a deep learning methodJinsen Li, Tsu-Pei Chiu, Remo Rohs
Bioinformatics (Oxford, England)|September 30, 2022
Top-Down Crawl: a method for the ultra-rapid and motif-free alignment of sequences with associated binding metricsBrendon H Cooper, Tsu-Pei Chiu, Remo Rohs
Nucleic Acids Research|April 22, 2017
DNAproDB: an interactive tool for structural analysis of DNA-protein complexesJared M Sagendorf, Helen M Berman, Remo Rohs
Bioinformatics (Oxford, England)|May 26, 2017
DNA sequence+shape kernel enables alignment-free modeling of transcription factor bindingWenxiu Ma, Lin Yang, Remo Rohs, et al.
Nucleic Acids Research|October 1, 2013
Covariation between homeodomain transcription factors and the shape of their DNA binding sitesIris Dror, Tianyin Zhou, Yael Mandel-Gutfreund, et al.
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