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Nature Protocols|April 12, 2023
Full-length circular RNA profiling by nanopore sequencing with CIRI-longLingling Hou, Jinyang Zhang, Fangqing ZhaoGenomics, Proteomics & Bioinformatics|January 27, 2022
Screening Linear and Circular RNA Transcripts from Stress GranulesShuai Chen, Jinyang Zhang, Fangqing ZhaoGenome Biology|April 30, 2020
CircAtlas: an integrated resource of one million highly accurate circular RNAs from 1070 vertebrate transcriptomesWanying Wu, Peifeng Ji, Fangqing ZhaoBriefings in Bioinformatics|March 24, 2017
Circular RNA identification based on multiple seed matchingYuan Gao, Jinyang Zhang, Fangqing ZhaoNucleic Acids Research|September 22, 2023
circAtlas 3.0: a gateway to 3 million curated vertebrate circular RNAs based on a standardized nomenclature schemeWanying Wu, Fangqing Zhao, Jinyang ZhangEnvironmental Microbiology|June 4, 2015
Phage-bacteria interaction network in human oral microbiomeJinfeng Wang, Yuan Gao, Fangqing ZhaoFundamental Research|February 6, 2026
The evolving landscape of spatial proteomics technologies in the AI ageBeiyu Hu, Junjie Zhu, Fangqing ZhaoNucleic Acids Research|December 8, 2016
The combination of direct and paired link graphs can boost repetitive genome assemblyWenyu Shi, Peifeng Ji, Fangqing ZhaoNature Computational Science|January 4, 2024
Large-scale microbiome data integration enables robust biomarker identificationLiwen Xiao, Fengyi Zhang, Fangqing ZhaoGenome Biology|November 19, 2016
A novel codon-based de Bruijn graph algorithm for gene construction from unassembled transcriptomesGongxin Peng, Peifeng Ji, Fangqing ZhaoPageof 73