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IEEE Transactions on Computational Biology and Bioinformatics|August 14, 2025
A Deep Learning Framework for Chromatin Loop De Novo Prediction with Enhanced Feature ExtractionJialiang Sun, Jun Guo, Jian Liu
Plos Computational Biology|March 14, 2024
CRISPR-M: Predicting sgRNA off-target effect using a multi-view deep learning networkJialiang Sun, Jun Guo, Jian Liu
Briefings in Bioinformatics|May 4, 2023
LPAD: using network construction and label propagation to detect topologically associating domains from Hi-C dataJian Liu, Pingjing Li, Jialiang Sun, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics|July 7, 2021
Effective Identification of Bacterial Genomes From Short and Long Read Sequencing DataJian Liu, Jialiang Sun, Yongzhuang Liu
Nucleic Acids Research|August 26, 2022
DupScan: predicting and visualizing vertebrate genome duplication databaseJianguo Lu, Peilin Huang, Jialiang Sun, et al.
Briefings in Bioinformatics|August 6, 2023
HiBrowser: an interactive and dynamic browser for synchronous Hi-C data visualizationPingjing Li, Hong Liu, Jialiang Sun, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics|November 6, 2019
Jointly Integrating VCF-Based Variants and OWL-Based Biomedical Ontologies in MongoDBJian Liu, Zhi Qu, Mo Yang, et al.
Bioinformatics (Oxford, England)|June 28, 2024
PhiHER2: phenotype-informed weakly supervised model for HER2 status prediction from pathological imagesChaoyang Yan, Jialiang Sun, Yiming Guan, et al.
IEEE Transactions on Computational Biology and Bioinformatics|September 25, 2025
HiADN: Lightweight Resolution Enhancement of Hi-C Data Using High Information Attention Distillation NetworkPingjing Li, Jiuxin Feng, Jun Guo, et al.
Briefings in Bioinformatics|September 7, 2022
SCDD: a novel single-cell RNA-seq imputation method with diffusion and denoisingJian Liu, Yichen Pan, Zhihan Ruan, et al.
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