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Journal of Immunological Methods|October 12, 2010
Modeling major histocompatibility complex binding by nonparametric averaging of multiple predictors and sequence encodingsJim C Huang, Nebojsa JojicIEEE Transactions on Pattern Analysis and Machine Intelligence|November 6, 2015
Capturing Spatial Interdependence in Image Features: The Counting Grid, an Epitomic Representation for Bags of FeaturesAlessandro Perina, Nebojsa JojicIEEE Transactions on Pattern Analysis and Machine Intelligence|September 22, 2005
A comparison of algorithms for inference and learning in probabilistic graphical modelsBrendan J Frey, Nebojsa JojicPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|January 31, 2008
Population sequencing using short reads: HIV as a case studyVladimir Jojic, Tomer Hertz, Nebojsa JojicPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|December 4, 2013
Bags of words models of epitope sets: HIV viral load regression with counting gridsAlessandro Perina, Pietro Lovato, Nebojsa JojicJournal of Virology|November 19, 2010
Mapping the landscape of host-pathogen coevolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteinsTomer Hertz, David Nolan, Ian James, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|November 4, 2011
Nonparametric combinatorial sequence modelsFabian L Wauthier, Michael I Jordan, Nebojsa JojicJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 6, 2008
Shift-invariant adaptive double threading: learning MHC II-peptide bindingNoah Zaitlen, Manuel Reyes-Gomez, David Heckerman, et al.IEEE Transactions on Pattern Analysis and Machine Intelligence|December 14, 2011
Free Energy Score Spaces: Using Generative Information in Discriminative ClassifiersAlessandro Perina, Marco Cristani, Umberto Castellani, et al.Proceedings of the National Academy of Sciences of the United States of America|August 28, 2025
Echoes in AI: Quantifying lack of plot diversity in LLM outputsWeijia Xu, Nebojsa Jojic, Sudha Rao, et al.Pageof 7