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Nucleic Acids Research|December 5, 2003
Gene structure prediction in syntenic DNA segmentsJonathan E Moore, James A LakeMolecular Biology and Evolution|June 5, 2003
Horizontal gene transfer accelerates genome innovation and evolutionRavi Jain, Maria C Rivera, Jonathan E Moore, et al.Theoretical Population Biology|August 9, 2002
Horizontal gene transfer in microbial genome evolutionRavi Jain, Maria C Rivera, Jonathan E Moore, et al.Molecular Biology and Evolution|May 22, 2008
Reconstructing evolutionary graphs: 3D parsimonyJames A LakePhilosophical Transactions of the Royal Society of London. Series B, Biological Sciences|September 2, 2015
Eukaryotic originsJames A LakeNature|March 22, 2002
The transorientation hypothesis for codon recognition during protein synthesisAnne B Simonson, James A LakeGenome Biology and Evolution|November 28, 2013
The deep roots of the rings of lifeJames A Lake, Janet S SinsheimerNature|September 10, 2004
The ring of life provides evidence for a genome fusion origin of eukaryotesMaria C Rivera, James A LakeMolecular Biology and Evolution|January 24, 2004
Deriving the genomic tree of life in the presence of horizontal gene transfer: conditioned reconstructionJames A Lake, Maria C RiveraPageof 10