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Bioinformatics (Oxford, England)|September 30, 2022
GBZ file format for pangenome graphsJouni Sirén, Benedict PatenBiorxiv : the Preprint Server for Biology|July 17, 2026
GBZ-base and GAF-base: Indexed pangenome file formatsJouni Sirén, Benedict Paten, Biorxiv : the Preprint Server for Biology|June 4, 2025
Lossless Pangenome Indexing Using Tag ArraysParsa Eskandar, Benedict Paten, Jouni SirénResearch Square|February 6, 2026
Lossless Pangenome Indexing Using Tag ArraysParsa Eskandar, Benedict Paten, Jouni SirénAlgorithms for Molecular Biology : AMB|June 19, 2026
Lossless pangenome indexing using tag arraysParsa Eskandar, Benedict Paten, Jouni SirénBioinformatics (Oxford, England)|August 14, 2019
Haplotype-aware graph indexesJouni Sirén, Erik Garrison, Adam M Novak, et al.Bioinformatics (Oxford, England)|July 14, 2020
Distance indexing and seed clustering in sequence graphsXian Chang, Jordan Eizenga, Adam M Novak, et al.Nature Methods|January 16, 2023
Haplotype-aware pantranscriptome analyses using spliced pangenome graphsJonas A Sibbesen, Jordan M Eizenga, Adam M Novak, et al.Genome Biology|February 14, 2020
Genotyping structural variants in pangenome graphs using the vg toolkitGlenn Hickey, David Heller, Jean Monlong, et al.Nature Biotechnology|August 21, 2018
Variation graph toolkit improves read mapping by representing genetic variation in the referenceErik Garrison, Jouni Sirén, Adam M Novak, et al.Pageof 21