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Biorxiv : the Preprint Server for Biology|February 27, 2026
Stoichiometric binding of Cyclophilin-A to the HIV-1 capsid modulates its mechanoelastic propertiesJuan S Rey, Alexander J Bryer, Juan R PerillaNature Communications|April 10, 2023
Performance efficient macromolecular mechanics via sub-nanometer shape based coarse grainingAlexander J Bryer, Juan S Rey, Juan R PerillaThe Journal of Chemical Physics|October 23, 2020
Molecular determinants of Ebola nucleocapsid stability from molecular dynamics simulationsChaoyi Xu, Nidhi Katyal, Tanya Nesterova, et al.Journal of the American Chemical Society|July 17, 2003
Understanding the Hofmeister effect in interactions between chaotropic anions and lipid bilayers: molecular dynamics simulationsJonathan N Sachs, Thomas B WoolfPhysical Review Letters|October 26, 2002
Theory of a systematic computational error in free energy differencesDaniel M Zuckerman, Thomas B WoolfThe Journal of Physical Chemistry. B|December 22, 2025
Transient Occupancy and Pore Dynamics: IP6 Behavior in HIV-1 T = 4 CapsidsAmanda C Macke, Chaoyi Xu, Sruthi Sudhakar, et al.Proteins|August 12, 2003
Discrimination of native loop conformations in membrane proteins: decoy library design and evaluation of effective energy scoring functionsLucy R Forrest, Thomas B WoolfProteins|December 2, 2009
Cooperative nature of gating transitions in K(+) channels as seen from dynamic importance sampling calculationsElizabeth J Denning, Thomas B WoolfBiophysical Journal|July 1, 2008
Double bilayers and transmembrane gradients: a molecular dynamics study of a highly charged peptideElizabeth J Denning, Thomas B WoolfCurrent Opinion in Structural Biology|June 22, 2025
Atomistic simulations of intact virus capsids: A computational challenge worth the scientific payoffCarolina Pérez-Segura, Juan R Perilla, Jodi A Hadden-PerillaPageof 12