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Frontiers in Microbiology|April 19, 2021
Rapid Open-Source SNP-Based Clustering Offers an Alternative to Core Genome MLST for Outbreak Tracing in a Hospital SettingJudit Szarvas, Mette Damkjaer Bartels, Henrik Westh, et al.
Viruses|November 13, 2020
Phylogenetic Investigation of Norovirus Transmission between Humans and AnimalsNele Villabruna, Ray W Izquierdo Lara, Judit Szarvas, et al.
Msystems|March 28, 2022
Global Distribution of mcr Gene Variants in 214K Metagenomic SamplesHannah-Marie Martiny, Patrick Munk, Christian Brinch, et al.
Microbiology Resource Announcements|January 5, 2024
The first complete genome sequence of Staphylococcus aureus ST5477Pimlapas Leekitcharoenphon, Saria Otani, Judit Szarvas, et al.
Frontiers in Microbiology|February 19, 2025
High throughput single cell metagenomic sequencing with semi-permeable capsules: unraveling microbial diversity at the single-cell level in sewage and fecal microbiomesMeilee Ling, Judit Szarvas, Vaida Kurmauskaitė, et al.
Communications Biology|March 22, 2020
Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platformJudit Szarvas, Johanne Ahrenfeldt, Jose Luis Bellod Cisneros, et al.
Frontiers in Microbiology|July 2, 2026
Microbial composition of archaeological middens: tracing human footprints through centuries in Greenland's ancient settlementsLorrie Maccario, Saria Otani, Judit Szarvas, et al.
Msystems|April 6, 2022
PlasmidHostFinder: Prediction of Plasmid Hosts Using Random ForestDerya Aytan-Aktug, Philip T L C Clausen, Judit Szarvas, et al.
Scientific Reports|February 22, 2020
Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clusteringJohanne Ahrenfeldt, Madina Waisi, Isabella C Loft, et al.
Microbiology Spectrum|November 15, 2022
SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from AssembliesDerya Aytan-Aktug, Vladislav Grigorjev, Judit Szarvas, et al.
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