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Current Opinion in Microbiology|June 17, 2018
Go with the flow or solitary confinement: a look inside the single-cell toolbox for isolation of rare and uncultured microbesGeert Rb Huys, Jeroen RaesFEMS Microbiology Reviews|July 23, 2025
Droplet microfluidics for single-cell studies: a frontier in ecological understanding of microbiomesWannes Nauwynck, Karoline Faust, Nico BoonPlos Computational Biology|January 26, 2026
PlasticEnz: An integrated database and screening tool combining homology and machine learning to identify plastic-degrading enzymes in meta-omics datasetsAnna Krzynowek, Jasper Snoeks, Karoline FaustTrends in Genetics : TIG|June 14, 2005
Functional divergence of proteins through frameshift mutationsJeroen Raes, Yves Van de PeerApplied Bioinformatics|May 8, 2004
Gene duplication, the evolution of novel gene functions, and detecting functional divergence of duplicates in silicoJeroen Raes, Yves Van de PeerBio Systems|June 8, 2011
Prediction of metabolic pathways from genome-scale metabolic networksKaroline Faust, Didier Croes, Jacques van HeldenTrends in Biochemical Sciences|October 3, 2006
Nonsense-mediated mRNA decay: Target genes and functional diversification of effectorsJan Rehwinkel, Jeroen Raes, Elisa IzaurraldeNature Reviews. Microbiology|January 1, 2026
Keystone concept revisited: insights into microbial community dynamics and controlDaniel Rios Garza, Didier Gonze, Karoline FaustBioinformatics (Oxford, England)|September 25, 2009
In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'Karoline Faust, Didier Croes, Jacques van HeldenJournal of Molecular Biology|March 14, 2009
Metabolic pathfinding using RPAIR annotationKaroline Faust, Didier Croes, Jacques van HeldenPageof 30