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Briefings in Functional Genomics|December 16, 2014
High-throughput characterization of protein-RNA interactionsKate B Cook, Timothy R Hughes, Quaid D MorrisJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 7, 2006
GenRate: a generative model that reveals novel transcripts in genome-tiling microarray dataBrendan J Frey, Quaid D Morris, Timothy R HughesMethods (San Diego, Calif.)|June 28, 2017
RNAcompete-S: Combined RNA sequence/structure preferences for RNA binding proteins derived from a single-step in vitro selectionKate B Cook, Shankar Vembu, Kevin C H Ha, et al.Current Opinion in Structural Biology|September 2, 2018
Motif models for RNA-binding proteinsAlexander Sasse, Kaitlin U Laverty, Timothy R Hughes, et al.Bioinformatics (Oxford, England)|June 18, 2005
GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray dataJim C Huang, Quaid D Morris, Timothy R Hughes, et al.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|March 12, 2005
Genrate: a generative model that finds and scores new genes and exons in genomic microarray dataBrendan J Frey, Quaid D Morris, Wen Zhang, et al.Methods (San Diego, Calif.)|December 14, 2016
RNAcompete methodology and application to determine sequence preferences of unconventional RNA-binding proteinsDebashish Ray, Kevin C H Ha, Kate Nie, et al.Nucleic Acids Research|November 2, 2010
RBPDB: a database of RNA-binding specificitiesKate B Cook, Hilal Kazan, Khalid Zuberi, et al.Nucleic Acids Research|January 11, 2005
Detection and discovery of RNA modifications using microarraysShawna L Hiley, Jane Jackman, Tomas Babak, et al.Plos One|November 19, 2013
Paralogs hnRNP L and hnRNP LL exhibit overlapping but distinct RNA binding constraintsSarah A Smith, Debashish Ray, Kate B Cook, et al.Pageof 26