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Cell Reports Methods
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December 1, 2022
Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects
Koen Van den Berge, Hsin-Jung Chou, Hector Roux de Bézieux, et al.
Nature Communications
|
March 7, 2020
Trajectory-based differential expression analysis for single-cell sequencing data
Koen Van den Berge, Hector Roux de Bézieux, Kelly Street, et al.
Biorxiv : the Preprint Server for Biology
|
June 29, 2026
Annotation-Based Gene-Peak Links Improve Regulatory Network Prediction of Gene Expression in Human Kidney Multi-Omics
Xinran Wang, Kimberly Siegmund, Jesse A Goodrich, et al.
Biorxiv : the Preprint Server for Biology
|
November 14, 2023
A Latent Activated Olfactory Stem Cell State Revealed by Single-Cell Transcriptomic and Epigenomic Profiling
Koen Van den Berge, Dana Bakalar, Hsin-Jung Chou, et al.
Stem Cell Reports
|
January 9, 2026
A latent activated olfactory stem cell state revealed by single-cell transcriptomic and epigenomic profiling
Koen Van den Berge, Dana Bakalar, Hsin-Jung Chou, et al.
Research Square
|
July 18, 2023
Spatially resolved immune exhaustion within the alloreactive microenvironment predicts liver transplant rejection
Arianna Barbetta, Brittany Rocque, Sarah Bangerth, et al.
Biorxiv : the Preprint Server for Biology
|
February 27, 2026
VDJdive and ECLIPSE enhance single-cell TCR sequencing analysis through the probabilistic resolution of ambiguous clonotypes
Ethan C Burns, Mercedeh Movassagh, Jill F Lundell, et al.
Biorxiv : the Preprint Server for Biology
|
January 23, 2026
Single-Cell Multiomic Profiling Uncovers Radiation Dosage-Sensitive, Cluster-Specific Regulatory Dynamics in Glioblastoma
Khoi Huynh, Sara Nalina Barcik Weissman, Cheol Park, et al.
Science Advances
|
April 12, 2024
Spatially resolved immune exhaustion within the alloreactive microenvironment predicts liver transplant rejection
Arianna Barbetta, Brittany Rocque, Sarah Bangerth, et al.
BMC Bioinformatics
|
May 24, 2024
Improving replicability in single-cell RNA-Seq cell type discovery with Dune
Hector Roux de Bézieux, Kelly Street, Stephan Fischer, et al.
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Showing results (11-20 of 29) with videos related to
Sort By:
Page
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Cell Reports Methods
|
December 1, 2022
Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects
Koen Van den Berge, Hsin-Jung Chou, Hector Roux de Bézieux, et al.
Nature Communications
|
March 7, 2020
Trajectory-based differential expression analysis for single-cell sequencing data
Koen Van den Berge, Hector Roux de Bézieux, Kelly Street, et al.
Biorxiv : the Preprint Server for Biology
|
June 29, 2026
Annotation-Based Gene-Peak Links Improve Regulatory Network Prediction of Gene Expression in Human Kidney Multi-Omics
Xinran Wang, Kimberly Siegmund, Jesse A Goodrich, et al.
Biorxiv : the Preprint Server for Biology
|
November 14, 2023
A Latent Activated Olfactory Stem Cell State Revealed by Single-Cell Transcriptomic and Epigenomic Profiling
Koen Van den Berge, Dana Bakalar, Hsin-Jung Chou, et al.
Stem Cell Reports
|
January 9, 2026
A latent activated olfactory stem cell state revealed by single-cell transcriptomic and epigenomic profiling
Koen Van den Berge, Dana Bakalar, Hsin-Jung Chou, et al.
Research Square
|
July 18, 2023
Spatially resolved immune exhaustion within the alloreactive microenvironment predicts liver transplant rejection
Arianna Barbetta, Brittany Rocque, Sarah Bangerth, et al.
Biorxiv : the Preprint Server for Biology
|
February 27, 2026
VDJdive and ECLIPSE enhance single-cell TCR sequencing analysis through the probabilistic resolution of ambiguous clonotypes
Ethan C Burns, Mercedeh Movassagh, Jill F Lundell, et al.
Biorxiv : the Preprint Server for Biology
|
January 23, 2026
Single-Cell Multiomic Profiling Uncovers Radiation Dosage-Sensitive, Cluster-Specific Regulatory Dynamics in Glioblastoma
Khoi Huynh, Sara Nalina Barcik Weissman, Cheol Park, et al.
Science Advances
|
April 12, 2024
Spatially resolved immune exhaustion within the alloreactive microenvironment predicts liver transplant rejection
Arianna Barbetta, Brittany Rocque, Sarah Bangerth, et al.
BMC Bioinformatics
|
May 24, 2024
Improving replicability in single-cell RNA-Seq cell type discovery with Dune
Hector Roux de Bézieux, Kelly Street, Stephan Fischer, et al.
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of 3