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IEEE Transactions on Visualization and Computer Graphics|November 21, 2025
GNN101: Visual Learning of Graph Neural Networks in Your Web BrowserYilin Lu, Chongwei Chen, Yuxin Chen, et al.IEEE Transactions on Pattern Analysis and Machine Intelligence|March 3, 2025
A Causality-Aware Paradigm for Evaluating Creativity of Multimodal Large Language ModelsZhongzhan Huang, Shanshan Zhong, Pan Zhou, et al.Nature Biomedical Engineering|September 9, 2025
Combinatorial prediction of therapeutic perturbations using causally inspired neural networksGuadalupe Gonzalez, Xiang Lin, Isuru Herath, et al.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|December 21, 2022
Session Introduction: Graph Representations and Algorithms in BiomedicineBrianna Chrisman, Maya Varma, Sepideh Maleki, et al.Cell Systems|May 29, 2024
On knowing a gene: A distributional hypothesis of gene functionJason J Kwon, Joshua Pan, Guadalupe Gonzalez, et al.Biorxiv : the Preprint Server for Biology|January 23, 2024
Combinatorial prediction of therapeutic perturbations using causally-inspired neural networksGuadalupe Gonzalez, Xiang Lin, Isuru Herath, et al.Frontiers in Genetics|May 24, 2019
To Embed or Not: Network Embedding as a Paradigm in Computational BiologyWalter Nelson, Marinka Zitnik, Bo Wang, et al.Nature Communications|November 10, 2021
Co-evolution based machine-learning for predicting functional interactions between human genesDoron Stupp, Elad Sharon, Idit Bloch, et al.Medrxiv : the Preprint Server for Health Sciences|January 13, 2025
From Text to Translation: Using Language Models to Prioritize Variants for Clinical ReviewWeijiang Li, Xiaomin Li, Ethan Lavallee, et al.Biorxiv : the Preprint Server for Biology|November 18, 2024
FoldMark: Protecting Protein Generative Models with WatermarkingZaixi Zhang, Ruofan Jin, Kaidi Fu, et al.Pageof 44