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The Journal of Biological Chemistry|December 23, 2018
Conformational selection turns on phenylalanine hydroxylaseKirill A Konovalov, Wei Wang, Xuhui HuangJournal of the American Chemical Society|April 30, 2025
Transcription-Coupled Template Reconfiguration of 8-Oxoguanine for Error-Prone Transcription Revealed by Time-Resolved X-ray Crystallography and Molecular DynamicsJuntaek Oh, Kirill A Konovalov, Peini Hou, et al.JACS Au|October 4, 2021
Markov State Models to Study the Functional Dynamics of Proteins in the Wake of Machine LearningKirill A Konovalov, Ilona Christy Unarta, Siqin Cao, et al.The Journal of Chemical Physics|September 1, 2023
GraphVAMPnets for uncovering slow collective variables of self-assembly dynamicsBojun Liu, Mingyi Xue, Yunrui Qiu, et al.Biology Direct|December 1, 2017
COGcollator: a web server for analysis of distant relationships between homologous protein familiesDaria V Dibrova, Kirill A Konovalov, Vadim V Perekhvatov, et al.BMC Ecology and Evolution|May 21, 2021
Searching for signatures of positive selection in cytochrome b gene associated with subterranean lifestyle in fast-evolving arvicolines (Arvicolinae, Cricetidae, Rodentia)Olga V Bondareva, Nadezhda A Potapova, Kirill A Konovalov, et al.The Journal of Biological Chemistry|February 6, 2019
8-Oxo-guanine DNA damage induces transcription errors by escaping two distinct fidelity control checkpoints of RNA polymerase IIKirill A Konovalov, Fátima Pardo-Avila, Carmen Ka Man Tse, et al.The Journal of Biological Chemistry|May 15, 2021
A comprehensive mechanism for 5-carboxylcytosine-induced transcriptional pausing revealed by Markov state modelsKirill A Konovalov, Wei Wang, Guo Wang, et al.Biophysical Journal|August 28, 2025
Role of Hsp70 Chaperone in Client-Protein Folding Elucidated by Markov State Modeling and NMR Restraint-Assisted Molecular Dynamics SimulationsMichael S O'Connor, Kirill A Konovalov, Josephine L Duvall, et al.Biology Direct|November 24, 2017
COGNAT: a web server for comparative analysis of genomic neighborhoodsOlesya I Klimchuk, Kirill A Konovalov, Vadim V Perekhvatov, et al.Pageof 2