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Journal of Molecular Biology|May 20, 2022
Computational Approaches for RNA Structure Ensemble Deconvolution from Structure Probing DataSharon Aviran, Danny IncarnatoNature Communications|May 3, 2020
Stability and nuclear localization of yeast telomerase depend on protein components of RNase P/MRPP Daniela Garcia, Robert W Leach, Gable M Wadsworth, et al.Nature Communications|February 11, 2018
Statistical modeling of RNA structure profiling experiments enables parsimonious reconstruction of structure landscapesHua Li, Sharon AviranGenes|June 16, 2018
Automated Recognition of RNA Structure Motifs by Their SHAPE Data SignaturesPierce Radecki, Mirko Ledda, Sharon AviranNAR Genomics and Bioinformatics|August 27, 2021
Rapid structure-function insights via hairpin-centric analysis of big RNA structure probing datasetsPierce Radecki, Rahul Uppuluri, Sharon AviranPlos One|November 22, 2018
Extracting information from RNA SHAPE data: Kalman filtering approachSana Vaziri, Patrice Koehl, Sharon AviranCell Systems|May 15, 2017
PROBer Provides a General Toolkit for Analyzing Sequencing-Based Toeprinting AssaysBo Li, Akshay Tambe, Sharon Aviran, et al.RNA Biology|October 4, 2021
Accurate detection of RNA stem-loops in structurome data reveals widespread association with protein binding sitesPierce Radecki, Rahul Uppuluri, Kaustubh Deshpande, et al.Physical Biology|July 11, 2020
Urn models for stochastic gene expression yield intuitive insights into the probability distributions of single-cell mRNA and protein countsKrishna Choudhary, Atul NarangBiophysical Journal|July 24, 2019
Analytical Expressions and Physics for Single-Cell mRNA Distributions of the lac Operon of E. coliKrishna Choudhary, Atul NarangPageof 84