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BMC Bioinformatics|August 20, 2010
Hidden Markov model speed heuristic and iterative HMM search procedureL Steven Johnson, Sean R Eddy, Elon PortugalyBioinformatics (Oxford, England)|July 16, 2002
Selecting targets for structural determination by navigating in a graph of protein familiesElon Portugaly, Ilona Kifer, Michal LinialNucleic Acids Research|November 14, 2006
EVEREST: a collection of evolutionary conserved protein domainsElon Portugaly, Nathan Linial, Michal LinialBMC Bioinformatics|June 6, 2006
EVEREST: automatic identification and classification of protein domains in all protein sequencesElon Portugaly, Amir Harel, Nathan Linial, et al.Bioinformatics (Oxford, England)|July 1, 2008
Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein spaceYaniv Loewenstein, Elon Portugaly, Menachem Fromer, et al.Proceedings of the National Academy of Sciences of the United States of America|September 18, 2004
Circular box C/D RNAs in Pyrococcus furiosusNatalia G Starostina, Sarah Marshburn, L Steven Johnson, et al.Nucleic Acids Research|January 10, 2003
ProtoNet: hierarchical classification of the protein spaceOri Sasson, Avishay Vaaknin, Hillel Fleischer, et al.Plos Computational Biology|June 3, 2008
A probabilistic model of local sequence alignment that simplifies statistical significance estimationSean R EddyPlos Biology|January 22, 2005
A model of the statistical power of comparative genome sequence analysisSean R EddyGenome Informatics. International Conference on Genome Informatics|February 25, 2010
A new generation of homology search tools based on probabilistic inferenceSean R EddyPageof 11