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Biorxiv : the Preprint Server for Biology
|
October 10, 2024
Unified Sampling and Ranking for Protein Docking with DFMDock
Lee-Shin Chu, Sudeep Sarma, Jeffrey J Gray
Biorxiv : the Preprint Server for Biology
|
December 11, 2025
Adapting Co-Folding Models for Structure-Based Protein-Protein Docking Through Flow Matching
Da Xu, Lee-Shin Chu, Jeffrey J Gray
Biorxiv : the Preprint Server for Biology
|
June 22, 2026
ProtAff: Protein Binding Affinity Prediction via LoRA-Finetuned ESM-2
Lee-Shin Chu, Jeff Vogt, Michael Chungyoun, et al.
Protein Science : a Publication of the Protein Society
|
December 26, 2023
Flexible protein-protein docking with a multitrack iterative transformer
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, et al.
Biorxiv : the Preprint Server for Biology
|
July 10, 2023
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, et al.
Nature Communications
|
May 15, 2023
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
Jeffrey A Ruffolo, Lee-Shin Chu, Sai Pooja Mahajan, et al.
Biorxiv : the Preprint Server for Biology
|
December 15, 2025
Can We Extract Physics-like Energies from Generative Protein Diffusion Models?
Sudeep Sarma, Harrison Truscott, Da Xu, et al.
The Journal of Physical Chemistry. B
|
August 14, 2020
Effect of Small Cage Guests on Dissociation Properties of Tetrahydrofuran Hydrates
Kuang-Yu Chang, Che-Kang Chu, Lee-Shin Chu, et al.
Proteins
|
September 22, 2025
Docking With Rosetta and Deep Learning Approaches in CAPRI Rounds 47-55
Ameya Harmalkar, Lee-Shin Chu, Samuel W Canner, et al.
Molecular & Cellular Proteomics : MCP
|
January 2, 2025
Molecular Display of the Animal Meta-Venome for Discovery of Novel Therapeutic Peptides
Meng-Hsuan Hsiao, Yang Miao, Zixing Liu, et al.
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of 2
Search research articles
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Showing results (1-10 of 12) with videos related to
Sort By:
Page
of 2
Biorxiv : the Preprint Server for Biology
|
October 10, 2024
Unified Sampling and Ranking for Protein Docking with DFMDock
Lee-Shin Chu, Sudeep Sarma, Jeffrey J Gray
Biorxiv : the Preprint Server for Biology
|
December 11, 2025
Adapting Co-Folding Models for Structure-Based Protein-Protein Docking Through Flow Matching
Da Xu, Lee-Shin Chu, Jeffrey J Gray
Biorxiv : the Preprint Server for Biology
|
June 22, 2026
ProtAff: Protein Binding Affinity Prediction via LoRA-Finetuned ESM-2
Lee-Shin Chu, Jeff Vogt, Michael Chungyoun, et al.
Protein Science : a Publication of the Protein Society
|
December 26, 2023
Flexible protein-protein docking with a multitrack iterative transformer
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, et al.
Biorxiv : the Preprint Server for Biology
|
July 10, 2023
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, et al.
Nature Communications
|
May 15, 2023
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
Jeffrey A Ruffolo, Lee-Shin Chu, Sai Pooja Mahajan, et al.
Biorxiv : the Preprint Server for Biology
|
December 15, 2025
Can We Extract Physics-like Energies from Generative Protein Diffusion Models?
Sudeep Sarma, Harrison Truscott, Da Xu, et al.
The Journal of Physical Chemistry. B
|
August 14, 2020
Effect of Small Cage Guests on Dissociation Properties of Tetrahydrofuran Hydrates
Kuang-Yu Chang, Che-Kang Chu, Lee-Shin Chu, et al.
Proteins
|
September 22, 2025
Docking With Rosetta and Deep Learning Approaches in CAPRI Rounds 47-55
Ameya Harmalkar, Lee-Shin Chu, Samuel W Canner, et al.
Molecular & Cellular Proteomics : MCP
|
January 2, 2025
Molecular Display of the Animal Meta-Venome for Discovery of Novel Therapeutic Peptides
Meng-Hsuan Hsiao, Yang Miao, Zixing Liu, et al.
Page
of 2