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Frontiers in Immunology|July 3, 2025
Evolving fitness and immune escape: a retrospective analysis of SARS-CoV-2 spike protein (2020-2024) using protein language modelSihua Peng, Leke Lyu, Ludy Registre Carmola, et al.
Communications Medicine|May 9, 2025
Characterizing spatial epidemiology in a heterogeneous transmission landscape using the spatial transmission count statisticLeke Lyu, Gabriella Veytsel, Guppy Stott, et al.
Proceedings of the National Academy of Sciences of the United States of America|August 7, 2025
Tracing SARS-CoV-2 clusters across local scales using genomic dataLeke Lyu, Mandev Gill, Guppy Stott, et al.
Scientific Reports|December 9, 2023
Beyond scale-free networks: integrating multilayer social networks with molecular clusters in the local spread of COVID-19Kayo Fujimoto, Jacky Kuo, Guppy Stott, et al.
Scientific Reports|April 5, 2023
The species coalescent indicates possible bat and pangolin origins of the COVID-19 pandemicJialin Yang, Michael Skaro, Jiani Chen, et al.
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