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Bioinformatics (Oxford, England)|October 20, 2021
AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic treesLenore Pipes, Rasmus Nielsen
Elife|August 15, 2024
A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasetsLenore Pipes, Rasmus Nielsen
Virus Evolution|January 27, 2021
Synonymous mutations and the molecular evolution of SARS-CoV-2 originsHongru Wang, Lenore Pipes, Rasmus Nielsen
Cell Reports Methods|September 26, 2022
Estimating the relative proportions of SARS-CoV-2 haplotypes from wastewater samplesLenore Pipes, Zihao Chen, Svetlana Afanaseva, et al.
Molecular Biology and Evolution|December 9, 2020
Assessing Uncertainty in the Rooting of the SARS-CoV-2 PhylogenyLenore Pipes, Hongru Wang, John P Huelsenbeck, et al.
Human Genomics|December 14, 2004
Population genetic analysis of ascertained SNP dataRasmus Nielsen
Annual Review of Genetics|November 16, 2005
Molecular signatures of natural selectionRasmus Nielsen
Systematic Biology|October 25, 2002
Mapping mutations on phylogeniesRasmus Nielsen
Evolution; International Journal of Organic Evolution|September 12, 2009
Adaptionism-30 years after Gould and LewontinRasmus Nielsen
Bioinformatics (Oxford, England)|January 26, 2022
SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencingSandra Hui, Rasmus Nielsen
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