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Journal of Molecular Biology|March 8, 2011
Characterizing the existing and potential structural space of proteins by large-scale multiple loop permutationsLiang Dai, Yaoqi ZhouProteins|June 15, 2010
Improving computational protein design by using structure-derived sequence profileLiang Dai, Yuedong Yang, Hyung Rae Kim, et al.Annual Review of Biophysics|March 5, 2013
Energy functions in de novo protein design: current challenges and future prospectsZhixiu Li, Yuedong Yang, Jian Zhan, et al.Proceedings of the National Academy of Sciences of the United States of America|November 13, 2013
Structural insights into the histone H1-nucleosome complexBing-Rui Zhou, Hanqiao Feng, Hidenori Kato, et al.Protein Science : a Publication of the Protein Society|June 26, 2003
Predicting the topology of transmembrane helical proteins using mean burial propensity and a hidden-Markov-model-based methodHongyi Zhou, Yaoqi ZhouProteins|May 18, 2004
Single-body residue-level knowledge-based energy score combined with sequence-profile and secondary structure information for fold recognitionHongyi Zhou, Yaoqi ZhouProteins|November 4, 2004
Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragmentsHongyi Zhou, Yaoqi ZhouDatabase : the Journal of Biological Databases and Curation|December 16, 2020
Large expert-curated database for benchmarking document similarity detection in biomedical literature searchPeter Brown, , Yaoqi ZhouProtein Science : a Publication of the Protein Society|October 17, 2002
Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability predictionHongyi Zhou, Yaoqi ZhouJournal of Computational Chemistry|December 24, 2015
Effective protein conformational sampling based on predicted torsion anglesYuedong Yang, Yaoqi ZhouPageof 61