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Current Opinion in Structural Biology|December 17, 2016
Path-sampling strategies for simulating rare events in biomolecular systemsLillian T Chong, Ali S Saglam, Daniel M ZuckermanChemical Science|March 19, 2019
Protein-protein binding pathways and calculations of rate constants using fully-continuous, explicit-solvent simulationsAli S Saglam, Lillian T ChongThe Journal of Physical Chemistry. B|December 18, 2015
Highly Efficient Computation of the Basal kon using Direct Simulation of Protein-Protein Association with Flexible Molecular ModelsAli S Saglam, Lillian T ChongAnnual Review of Biophysics|March 17, 2017
Weighted Ensemble Simulation: Review of Methodology, Applications, and SoftwareDaniel M Zuckerman, Lillian T ChongWiley Interdisciplinary Reviews. Computational Molecular Science|December 8, 2025
Weighted Ensemble Simulation: Advances in methods, software, and applicationsLillian T Chong, Daniel M ZuckermanBiorxiv : the Preprint Server for Biology|April 10, 2026
Rectifying AI-generated protein structure ensembles for equilibrium using physics-based computationsLisa Otten, Jeremy M Leung, Lillian T Chong, et al.Protein Science : a Publication of the Protein Society|July 2, 2015
Estimating first-passage time distributions from weighted ensemble simulations and non-Markovian analysesErnesto Suárez, Adam J Pratt, Lillian T Chong, et al.The Journal of Physical Chemistry Letters|August 18, 2016
Efficient Atomistic Simulation of Pathways and Calculation of Rate Constants for a Protein-Peptide Binding Process: Application to the MDM2 Protein and an Intrinsically Disordered p53 PeptideMatthew C Zwier, Adam J Pratt, Joshua L Adelman, et al.Living Journal of Computational Molecular Science|May 13, 2020
A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1.0]Anthony T Bogetti, Barmak Mostofian, Alex Dickson, et al.Biophysical Journal|November 22, 2011
Simulations of the alternating access mechanism of the sodium symporter Mhp1Joshua L Adelman, Amy L Dale, Matthew C Zwier, et al.Pageof 15