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Methods in Molecular Biology (Clifton, N.J.)|June 19, 2023
Visualization of Oligonucleotide-Based Probes Along Pseudochromosomes Using RIdeogram, KaryoploteR, and Circlize (Circos)Ludwig Mann, Sophie Maiwald
Molecular Biology and Evolution|January 23, 2024
Evolving Together: Cassandra Retrotransposons Gradually Mirror Promoter Mutations of the 5S rRNA GenesSophie Maiwald, Ludwig Mann, Sònia Garcia, et al.
BMC Genomics|January 24, 2024
High-fidelity (repeat) consensus sequences from short reads using combined read clustering and assemblyLudwig Mann, Kristin Balasch, Nicola Schmidt, et al.
BMC Bioinformatics|January 15, 2022
ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing dataLudwig Mann, Kathrin M Seibt, Beatrice Weber, et al.
Frontiers in Plant Science|March 14, 2022
Ancient Artworks and Crocus Genetics Both Support Saffron's Origin in Early GreeceSeyyedeh-Sanam Kazemi-Shahandashti, Ludwig Mann, Abdullah El-Nagish, et al.
Molecular Biology and Evolution|February 2, 2024
The Dynamic Interplay Between Ribosomal DNA and Transposable Elements: A Perspective From Genomics and CytogeneticsSònia Garcia, Ales Kovarik, Sophie Maiwald, et al.
Nature Communications|September 25, 2025
TEtrimmer: a tool to automate the manual curation of transposable elementsJiangzhao Qian, Hang Xue, Shujun Ou, et al.
BMC Research Notes|November 28, 2024
BeetRepeats: reference sequences for genome and polymorphism annotation in sugar beet and wild relativesNicola Schmidt, Sophie Maiwald, Ludwig Mann, et al.
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