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Plos One|May 13, 2025
dTOURS: Dense-region tagging for outbreak detection using ratio statisticsLukas Wagner, Richa AgarwalaBMC Bioinformatics|July 22, 2021
SAUTE: sequence assembly using target enrichmentAlexandre Souvorov, Richa AgarwalaGigascience|April 22, 2020
SRPRISM (Single Read Paired Read Indel Substitution Minimizer): an efficient aligner for assemblies with explicit guaranteesAleksandr Morgulis, Richa AgarwalaBioinformatics (Oxford, England)|March 3, 2007
COBALT: constraint-based alignment tool for multiple protein sequencesJason S Papadopoulos, Richa AgarwalaNature Methods|May 16, 2024
Indexing and searching petabase-scale nucleotide resourcesSergey A Shiryev, Richa AgarwalaGenome Biology|October 6, 2018
SKESA: strategic k-mer extension for scrupulous assembliesAlexandre Souvorov, Richa Agarwala, David J LipmanAmerican Journal of Medical Genetics. Part C, Seminars in Medical Genetics|July 31, 2003
Anabaptist genealogy databaseRicha Agarwala, Leslie G Biesecker, Alejandro A SchäfferJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 27, 2006
A fast and symmetric DUST implementation to mask low-complexity DNA sequencesAleksandr Morgulis, E Michael Gertz, Alejandro A Schäffer, et al.Bioinformatics (Oxford, England)|November 17, 2005
WindowMasker: window-based masker for sequenced genomesAleksandr Morgulis, E Michael Gertz, Alejandro A Schäffer, et al.Bioinformatics (Oxford, England)|March 3, 2007
rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality controlAlejandro A Schäffer, Edward Stallknecht Rice, William Cook, et al.Pageof 10