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Gut Microbes|January 12, 2024
Incorporating metabolic activity, taxonomy and community structure to improve microbiome-based predictive models for host phenotype predictionMahsa Monshizadeh, Yuzhen YeBioinformatics Advances|December 30, 2024
Multitask knowledge-primed neural network for predicting missing metadata and host phenotype based on human microbiomeMahsa Monshizadeh, Yuhui Hong, Yuzhen YeFrontiers in Cellular and Infection Microbiology|October 17, 2022
Revealing bacteria-phage interactions in human microbiome through the CRISPR-Cas immune systemsMahsa Monshizadeh, Sara Zomorodi, Kate Mortensen, et al.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine|November 22, 2011
Identification and Quantification of Abundant Species from Pyrosequences of 16S rRNA by Consensus AlignmentYuzhen YeInternational Journal of Molecular Sciences|September 9, 2014
Identification of diversity-generating retroelements in human microbiomesYuzhen YeBioinformatics (Oxford, England)|August 31, 2015
Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysisYuzhen Ye, Haixu TangNucleic Acids Research|May 4, 2019
MyDGR: a server for identification and characterization of diversity-generating retroelementsFatemeh Sharifi, Yuzhen YeNucleic Acids Research|December 14, 2021
Identification and classification of reverse transcriptases in bacterial genomes and metagenomesFatemeh Sharifi, Yuzhen YeMethods in Molecular Biology (Clifton, N.J.)|April 29, 2017
From Gene Annotation to Function Prediction for MetagenomicsFatemeh Sharifi, Yuzhen YeProtein Science : a Publication of the Protein Society|June 25, 2004
Database searching by flexible protein structure alignmentYuzhen Ye, Adam GodzikPageof 11