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Systematic Biology|August 4, 2016
Maximum Likelihood Implementation of an Isolation-with-Migration Model for Three SpeciesDaniel A Dalquen, Tianqi Zhu, Ziheng Yang
Nature Reviews. Genetics|May 20, 2020
Phylogenetic tree building in the genomic agePaschalia Kapli, Ziheng Yang, Maximilian J Telford
Molecular Biology and Evolution|April 25, 2023
Beginner's Guide on the Use of PAML to Detect Positive SelectionSandra Álvarez-Carretero, Paschalia Kapli, Ziheng Yang
Evolution; International Journal of Organic Evolution|June 1, 2017
STATISTICAL TESTS OF HOST-PARASITE COSPECIATIONJohn P Huelsenbeck, Bruce Rannala, Ziheng Yang
Genes & Genetic Systems|December 13, 2006
Proposed standard nomenclature for the alpha- and beta-globin gene familiesGabriela Aguileta, Joseph P Bielawski, Ziheng Yang
Journal of Molecular Evolution|October 18, 2003
Widespread adaptive evolution in the human immunodeficiency virus type 1 genomeWa Yang, Joseph P Bielawski, Ziheng Yang
Systematic Biology|January 25, 2020
The Impact of Cross-Species Gene Flow on Species Tree EstimationXiyun Jiao, Tomáš Flouri, Bruce Rannala, et al.
BMC Evolutionary Biology|September 1, 2007
Phylogenomic analysis of natural selection pressure in Streptococcus genomesMaria Anisimova, Joseph Bielawski, Katherine Dunn, et al.
Systematic Biology|March 14, 2026
Bayesian test of gene flow between sister lineages using genomic dataZiheng Yang, Xiyun Jiao, Sirui Cheng, et al.
Molecular Biology and Evolution|June 27, 2025
Inference of Gene Flow between Species from Genomic Data When the Mode, Direction, and Lineages are MisspecifiedYuttapong Thawornwattana, Tomáš Flouri, James Mallet, et al.
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