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Molecular Phylogenetics and Evolution|November 8, 2021
Gene-tree misrooting drives conflicts in phylogenomic coalescent analyses of palaeognath birdsMark P Simmons, Mark S Springer, John GatesyMolecular Biology and Evolution|November 5, 2003
How meaningful are Bayesian support values?Mark P Simmons, Kurt M Pickett, Masaki MiyaMolecular Phylogenetics and Evolution|May 22, 2007
The relative performance of indel-coding methods in simulationsMark P Simmons, Kai Müller, Andrew P NortonMolecular Phylogenetics and Evolution|August 4, 2004
Relative character-state space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid charactersMark P Simmons, Timothy G Carr, Kevin O'NeillCladistics : the International Journal of the Willi Hennig Society|December 8, 2021
Phylogenetic inference using non-redundant coding of dependent characters versus alternative approaches for protein-coding genesMark P Simmons, Li-Bing Zhang, Kai F MüllerMolecular Ecology|July 15, 2022
Lineage and role in integrative taxonomy of a heterotrophic orchid complexCraig F Barrett, Mathilda V Santee, Nicole M Fama, et al.Cladistics : the International Journal of the Willi Hennig Society|December 8, 2021
The deterministic effects of alignment bias in phylogenetic inferenceMark P Simmons, Kai F Müller, Colleen T WebbSystematic Biology|January 7, 2012
Miocene dispersal drives island radiations in the palm tribe Trachycarpeae (Arecaceae)Christine D Bacon, William J Baker, Mark P SimmonsMolecular Phylogenetics and Evolution|September 21, 2010
Alignment of, and phylogenetic inference from, random sequences: the susceptibility of alternative alignment methods to creating artifactual resolution and supportMark P Simmons, Kai F Müller, Andrew P NortonRNA (New York, N.Y.)|November 22, 2019
Adenine·cytosine substitutions are an alternative pathway of compensatory mutation in angiosperm ITS2Xinwan Zhang, Yong Cao, Wei Zhang, et al.Pageof 11