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Plos One|December 11, 2012
iPiG: integrating peptide spectrum matches into genome browser visualizationsMathias Kuhring, Bernhard Y RenardProteomics|July 3, 2015
Estimating the computational limits of detection of microbial non-model organismsMathias Kuhring, Bernhard Y RenardMethods in Molecular Biology (Clifton, N.J.)|October 22, 2024
Moving Toward Metaproteogenomics: A Computational Perspective on Analyzing Microbial Samples via ProteogenomicsFranziska Singer, Mathias Kuhring, Bernhard Y Renard, et al.Journal of Proteome Research|May 5, 2020
TaxIt: An Iterative Computational Pipeline for Untargeted Strain-Level Identification Using MS/MS Spectra from Pathogenic Single-Organism SamplesMathias Kuhring, Joerg Doellinger, Andreas Nitsche, et al.BMC Bioinformatics|July 31, 2015
SuRankCo: supervised ranking of contigs in de novo assembliesMathias Kuhring, Piotr Wojtek Dabrowski, Vitor C Piro, et al.Frontiers in Immunology|August 31, 2018
Silent Witness: Dual-Species Transcriptomics Reveals Epithelial Immunological Quiescence to Helminth Larval Encounter and Fostered Larval DevelopmentFriederike Ebner, Mathias Kuhring, Aleksandar Radonić, et al.Briefings in Bioinformatics|April 23, 2015
Docking small peptides remains a great challenge: an assessment using AutoDock VinaRobert Rentzsch, Bernhard Y RenardBioinformatics (Oxford, England)|June 15, 2015
MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphismsFranziska Zickmann, Bernhard Y RenardBioinformatics (Oxford, England)|November 22, 2015
iPQF: a new peptide-to-protein summarization method using peptide spectra characteristics to improve protein quantificationMartina Fischer, Bernhard Y RenardBriefings in Bioinformatics|April 4, 2017
Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?Thilo Muth, Bernhard Y RenardPageof 11