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Bio Systems|August 2, 2019
Combining evolution and self-organization to find natural Boolean representations in unconventional computational mediaMatthew D Egbert, Gerd Gruenert, Bashar Ibrahim, et al.BMC Bioinformatics|June 10, 2010
Rule-based spatial modeling with diffusing, geometrically constrained moleculesGerd Gruenert, Bashar Ibrahim, Thorsten Lenser, et al.International Journal of Neural Systems|December 6, 2014
Understanding Networks of Computing Chemical Droplet Neurons Based on Information FlowGerd Gruenert, Konrad Gizynski, Gabi Escuela, et al.Cells|April 9, 2014
Spatial rule-based modeling: a method and its application to the human mitotic kinetochoreBashar Ibrahim, Richard Henze, Gerd Gruenert, et al.Evolutionary Computation|October 12, 2016
Evolutionary Design of Classifiers Made of Droplets Containing a Nonlinear Chemical MediumKonrad Gizynski, Gerd Gruenert, Peter Dittrich, et al.Progress in Biophysics and Molecular Biology|April 9, 2013
Rule-based modeling and simulations of the inner kinetochore structureSergej Tschernyschkow, Sabine Herda, Gerd Gruenert, et al.Viruses|December 30, 2020
Structure and Hierarchy of SARS-CoV-2 Infection Dynamics Models Revealed by Reaction Network AnalysisStephan Peter, Peter Dittrich, Bashar IbrahimComputational and Structural Biotechnology Journal|December 26, 2025
A formal approach to the hierarchical structures of microbial communities with negative interactionsBeatrice Ruth, Bashar Ibrahim, Peter DittrichScientific Reports|June 22, 2017
A Dynamical Model for Activating and Silencing the Mitotic CheckpointRichard Henze, Peter Dittrich, Bashar IbrahimScientific Reports|October 11, 2023
Computing all persistent subspaces of a reaction-diffusion systemStephan Peter, Linus Woitke, Peter Dittrich, et al.Pageof 12