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Bioinformatics (Oxford, England)|April 30, 2010
ConsensusClusterPlus: a class discovery tool with confidence assessments and item trackingMatthew D Wilkerson, D Neil HayesBioinformatics (Oxford, England)|June 8, 2014
ABRA: improved coding indel detection via assembly-based realignmentLisle E Mose, Matthew D Wilkerson, D Neil Hayes, et al.Biochemical and Biophysical Research Communications|April 2, 2016
Cafeteria diet-induced obesity causes oxidative damage in white adiposeAmy R Johnson, Matthew D Wilkerson, Brante P Sampey, et al.Methods in Molecular Biology (Clifton, N.J.)|November 1, 2018
A Computational Protocol for Detecting Somatic Mutations by Integrating DNA and RNA SequencingMatthew D WilkersonBMC Bioinformatics|September 6, 2012
ReQON: a Bioconductor package for recalibrating quality scores from next-generation sequencing dataChristopher R Cabanski, Keary Cavin, Chris Bizon, et al.Nucleic Acids Research|August 13, 2013
BlackOPs: increasing confidence in variant detection through mappability filteringChristopher R Cabanski, Matthew D Wilkerson, Matthew Soloway, et al.Cell and Tissue Research|February 17, 2018
Chromaffin cell biology: inferences from The Cancer Genome AtlasLauren Fishbein, Matthew D WilkersonBiorxiv : the Preprint Server for Biology|September 26, 2025
Lung Adenocarcinoma Just Desserts: An Expanding Pie of Activating Oncogenes or a Layer Cake of Integrated AlterationsMinjeong Kim, Wisut Lamlertthon, Heejoon Jo, et al.Plos One|April 3, 2010
SWISS MADE: Standardized WithIn Class Sum of Squares to evaluate methodologies and dataset elementsChristopher R Cabanski, Yuan Qi, Xiaoying Yin, et al.Cancer Research|August 14, 2014
BRG1/SMARCA4 inactivation promotes non-small cell lung cancer aggressiveness by altering chromatin organizationTess Orvis, Austin Hepperla, Vonn Walter, et al.Pageof 23