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Journal of Chemical Theory and Computation|November 28, 2015
An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN Internal Loops Studied by Molecular Dynamics MethodsKamila Réblová, Zora Střelcová, Petr Kulhánek, et al.RNA Biology|April 28, 2011
Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolorMichael-Paul Vockenhuber, Cynthia M Sharma, Michaela G Statt, et al.Plos Biology|May 2, 2008
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological statesKevin A Wilkinson, Robert J Gorelick, Suzy M Vasa, et al.Nucleic Acids Research|July 15, 2015
Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing dataYang Wu, Binbin Shi, Xinqiang Ding, et al.Nature Communications|October 20, 2018
mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distancesWan-Jung C Lai, Mohammad Kayedkhordeh, Erica V Cornell, et al.Nucleic Acids Research|October 16, 2024
Two riboswitch classes that share a common ligand-binding fold show major differences in the ability to accommodate mutationsYoshita Srivastava, Olayinka Akinyemi, Tiana C Rohe, et al.Nucleic Acids Research|February 9, 2013
Pyrvinium pamoate changes alternative splicing of the serotonin receptor 2C by influencing its RNA structureManli Shen, Stanislav Bellaousov, Michael Hiller, et al.Nature Methods|November 9, 2010
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencingJason G Underwood, Andrew V Uzilov, Sol Katzman, et al.Biorxiv : the Preprint Server for Biology|July 3, 2023
Secondary structures that regulate mRNA translation provide insights for ASO-mediated modulation of cardiac hypertrophyOmar M Hedaya, Kadiam C Venkata Subbaiah, Feng Jiang, et al.Nucleic Acids Research|October 9, 2018
Identification of new high affinity targets for Roquin based on structural conservationJohannes Braun, Sandra Fischer, Zhenjiang Z Xu, et al.Pageof 18