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RNA (New York, N.Y.)|August 12, 2010
ProbKnot: fast prediction of RNA secondary structure including pseudoknotsStanislav Bellaousov, David H Mathews
Biorxiv : the Preprint Server for Biology|August 6, 2025
AlignmentFold and AlignmentPartition: Improving the align-then-fold approach for RNA secondary structure predictionAbhinav Mittal, David H Mathews
Methods in Molecular Biology (Clifton, N.J.)|May 23, 2024
Estimating RNA Secondary Structure Folding Free Energy Changes with efn2Jeffrey Zuber, David H Mathews
Current Opinion in Structural Biology|May 23, 2006
Prediction of RNA secondary structure by free energy minimizationDavid H Mathews, Douglas H Turner
Methods in Molecular Biology (Clifton, N.J.)|September 26, 2016
Prediction of Secondary Structures Conserved in Multiple RNA SequencesZhenjiang Zech Xu, David H Mathews
Current Protocols in Nucleic Acid Chemistry|April 23, 2008
Use of chemical modification to elucidate RNA folding pathwaysDavid H Mathews, Douglas H Turner
Nucleic Acids Research|December 13, 2007
Efficient siRNA selection using hybridization thermodynamicsZhi John Lu, David H Mathews
RNA (New York, N.Y.)|November 18, 2016
Exact calculation of loop formation probability identifies folding motifs in RNA secondary structuresMichael F Sloma, David H Mathews
Journal of Molecular Biology|March 21, 2002
Dynalign: an algorithm for finding the secondary structure common to two RNA sequencesDavid H Mathews, Douglas H Turner
Wiley Interdisciplinary Reviews. RNA|June 30, 2020
Making ends meet: New functions of mRNA secondary structureDmitri N Ermolenko, David H Mathews
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