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BMC Bioinformatics|March 29, 2006
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy changeAndrew V Uzilov, Joshua M Keegan, David H MathewsNucleic Acids Research|September 20, 2006
A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formationZhi John Lu, Douglas H Turner, David H MathewsJournal of Molecular Biology|October 20, 2024
memerna: Sparse RNA folding including coaxial stackingEliot Courtney, Amitava Datta, David H Mathews, et al.Cold Spring Harbor Perspectives in Biology|August 6, 2010
Folding and finding RNA secondary structureDavid H Mathews, Walter N Moss, Douglas H TurnerCurrent Protocols in Nucleic Acid Chemistry|December 3, 2016
RNA Secondary Structure PredictionDavid H Mathews, Douglas H Turner, Richard M WatsonNucleic Acids Research|October 17, 2017
TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologsZhen Tan, Yinghan Fu, Gaurav Sharma, et al.Nucleic Acids Research|June 7, 2017
Advanced multi-loop algorithms for RNA secondary structure prediction reveal that the simplest model is bestMax Ward, Amitava Datta, Michael Wise, et al.RNA (New York, N.Y.)|August 26, 2009
Improved RNA secondary structure prediction by maximizing expected pair accuracyZhi John Lu, Jason W Gloor, David H MathewsMicroorganisms|August 26, 2023
Genome-Wide DNA Changes Acquired by <i>Candida albicans</i> Caspofungin-Adapted MutantsJeffrey Zuber, Sudisht K Sah, David H Mathews, et al.Methods in Molecular Biology (Clifton, N.J.)|March 19, 2014
The determination of RNA folding nearest neighbor parametersMirela Andronescu, Anne Condon, Douglas H Turner, et al.Pageof 18