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Bioinformatics (Oxford, England)|November 18, 2011
QuRe: software for viral quasispecies reconstruction from next-generation sequencing dataMattia C F Prosperi, Marco SalemiEvolutionary Bioinformatics Online|June 30, 2012
PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral SequencesMelissa M Norström, Mattia C F Prosperi, Rebecca R Gray, et al.Scientific Reports|October 4, 2013
Empirical validation of viral quasispecies assembly algorithms: state-of-the-art and challengesMattia C F Prosperi, Li Yin, David J Nolan, et al.Plos One|November 5, 2010
The threshold bootstrap clustering: a new approach to find families or transmission clusters within molecular quasispeciesMattia C F Prosperi, Andrea De Luca, Simona Di Giambenedetto, et al.Microbiology Spectrum|October 12, 2022
Molecular Epidemiology of HIV-1 Subtype B Infection across Florida Reveals Few Large Superclusters with Metropolitan OriginShannan N Rich, Mattia C F Prosperi, Simon Dellicour, et al.AIDS Reviews|May 26, 2012
Computational models for prediction of response to antiretroviral therapiesMattia C F Prosperi, Andrea De LucaScientific Reports|August 20, 2017
Emergence of recombinant Mayaro virus strains from the Amazon basinCarla Mavian, Brittany D Rife, James Jarad Dollar, et al.Current HIV Research|October 30, 2015
Computer-Aided Optimization of Combined Anti-Retroviral Therapy for HIV: New Drugs, New Drug Targets and Drug ResistanceMaurizio Zazzi, Alessandro Cozzi-Lepri, Mattia C F ProsperiInfectious Disease Reports|January 29, 2014
The intra-host evolutionary and population dynamics of human immunodeficiency virus type 1: a phylogenetic perspectiveMarco SalemiPediatric Allergy and Immunology : Official Publication of the European Society of Pediatric Allergy and Immunology|October 18, 2013
Challenges in interpreting allergen microarrays in relation to clinical symptoms: a machine learning approachMattia C F Prosperi, Danielle Belgrave, Iain Buchan, et al.Pageof 24