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ISME Communications|April 23, 2026
Genomic and metagenomic survey of microbial carbonic anhydrase genes reveals novel clades, high diversity, and biome specificityMario E E Franco, Esther Singer, Simon Roux, et al.
Bioinformatics (Oxford, England)|September 14, 2011
Metavir: a web server dedicated to virome analysisSimon Roux, Michaël Faubladier, Antoine Mahul, et al.
The ISME Journal|June 22, 2016
Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analysesFrançois Enault, Arnaud Briet, Léa Bouteille, et al.
The ISME Journal|January 23, 2016
Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environmentsMaureen Berg, Ben Stenuit, Joshua Ho, et al.
Peerj|May 9, 2017
vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and BacteriaBenjamin Bolduc, Ho Bin Jang, Guilhem Doulcier, et al.
Frontiers in Microbiology|July 22, 2017
Comparative Omics and Trait Analyses of Marine Pseudoalteromonas Phages Advance the Phage OTU ConceptMelissa B Duhaime, Natalie Solonenko, Simon Roux, et al.
Nature Biotechnology|December 22, 2020
CheckV assesses the quality and completeness of metagenome-assembled viral genomesStephen Nayfach, Antonio Pedro Camargo, Frederik Schulz, et al.
ISME Communications|May 27, 2024
Distinct and rich assemblages of giant viruses in Arctic and Antarctic lakesThomas M Pitot, Josephine Z Rapp, Frederik Schulz, et al.
Virus Evolution|January 25, 2023
Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phagesEric Olo Ndela, Simon Roux, Christian Henke, et al.
Environmental Microbiome|December 30, 2025
Limited consensus of marine viral diversity observed across techniquesMarina Vila-Nistal, Francisco Martinez-Hernandez, Monica Lluesma-Gomez, et al.
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