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Nature Communications|October 13, 2017
Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomicsSimon Roux, Leong-Keat Chan, Rob Egan, et al.
The ISME Journal|November 7, 2021
Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological stateSophie K Jurgensen, Simon Roux, Sarah M Schwenck, et al.
ISME Communications|August 24, 2023
MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasetsDean Vik, Benjamin Bolduc, Simon Roux, et al.
Environmental Microbiology|February 25, 2015
Metagenomic characterization of viral communities in corals: mining biological signal from methodological noiseElisha M Wood-Charlson, Karen D Weynberg, Curtis A Suttle, et al.
Microbiome|March 21, 2025
Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soilsTatiana Demina, Heli Marttila, Igor S Pessi, et al.
Biorxiv : the Preprint Server for Biology|July 3, 2023
An Enterobacteriaceae bloom in aging animals is restrained by the gut microbiomeRebecca Choi, Rahul Bodkhe, Barbara Pees, et al.
Plos Biology|April 21, 2023
iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteriaSimon Roux, Antonio Pedro Camargo, Felipe H Coutinho, et al.
The ISME Journal|April 4, 2014
Diversity of environmental single-stranded DNA phages revealed by PCR amplification of the partial major capsid proteinMax Hopkins, Shweta Kailasan, Allison Cohen, et al.
Science Advances|June 20, 2025
Gaia: An AI-enabled genomic context-aware platform for protein sequence annotationNishant Jha, Joshua Kravitz, Jacob West-Roberts, et al.
Frontiers in Microbiology|May 15, 2015
Diversity and comparative genomics of Microviridae in Sphagnum- dominated peatlandsAchim Quaiser, Alexis Dufresne, Flore Ballaud, et al.
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