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Biorxiv : the Preprint Server for Biology|June 12, 2026
HyperNiche: Learning Heterophilic Cellular Niches with Hypergraph Neural NetworksMd Ishtyaq Mahmud, Tania Banerjee
Briefings in Bioinformatics|May 14, 2026
Artificial Intelligence in genomics: a comprehensive survey of methods, resources, challenges, and prospectsMd Ishtyaq Mahmud, Tania Banerjee
Biorxiv : the Preprint Server for Biology|July 3, 2026
NanoCellAnnotator: Formalizing Expert Cell Type Annotation with Large Language ModelsMd Ishtyaq Mahmud, Veena Kochat, Humaira Anzum, et al.
Arxiv|February 12, 2026
hSNMF: Hybrid Spatially Regularized NMF for Image-Derived Spatial TranscriptomicsMd Ishtyaq Mahmud, Veena Kochat, Suresh Satpati, et al.
Biorxiv : the Preprint Server for Biology|July 3, 2026
Ambiguity-Aware Multi-Stage Cell-Type Annotation for Spatial TranscriptomicsMd Ishtyaq Mahmud, Veena Kochat, Humaira Anzum, et al.
Biorxiv : the Preprint Server for Biology|April 20, 2026
A Counterfactual Framework for Directional Cell-Cell Interaction Analysis in Spatial TranscriptomicsHumaira Anzum, Veena Kochat, Suresh Satpati, et al.
Biorxiv : the Preprint Server for Biology|April 17, 2026
Spatially Anchored Regulatory State Inference in MelanomaJagan Mohan Reddy Dwarampudi, Veena Kochat, Suresh Satpati, et al.
Arxiv|February 12, 2026
A Multi-scale Linear-time Encoder for Whole-Slide Image AnalysisJagan Mohan Reddy Dwarampudi, Joshua Wong, Hien Van Nguyen, et al.
Arxiv|February 12, 2026
A Reproducible Framework for Bias-Resistant Machine Learning on Small-Sample Neuroimaging DataJagan Mohan Reddy Dwarampudi, Jennifer L Purks, Joshua Wong, et al.
Seminars in Neurology|November 25, 2025
The Role of Artificial Intelligence in Deep Brain StimulationTejas R Mehta, Venkat S Lavu, Hao Gao, et al.
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