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Journal of Molecular Biology|June 6, 2022
FTMove: A Web Server for Detection and Analysis of Cryptic and Allosteric Binding Sites by Mapping Multiple Protein StructuresMegan Egbert, George Jones, Matthew R Collins, et al.Current Opinion in Structural Biology|March 31, 2009
Convergence and combination of methods in protein-protein dockingSandor Vajda, Dima KozakovActa Crystallographica. Section D, Structural Biology|June 1, 2022
Elucidation of protein function using computational docking and hotspot analysis by ClusPro and FTMapGeorge Jones, Akhil Jindal, Usman Ghani, et al.Journal of Molecular Biology|December 22, 2019
ClusPro LigTBM: Automated Template-based Small Molecule DockingAndrey Alekseenko, Sergei Kotelnikov, Mikhail Ignatov, et al.Bioinformatics (Oxford, England)|July 1, 2016
Accounting for pairwise distance restraints in FFT-based protein-protein dockingBing Xia, Sandor Vajda, Dima KozakovPlos Computational Biology|October 3, 2014
Evidence of conformational selection driving the formation of ligand binding sites in protein-protein interfacesTanggis Bohnuud, Dima Kozakov, Sandor VajdaCurrent Opinion in Structural Biology|May 23, 2026
From memorization to generalization: Why physics will improve machine learning -based prediction of protein complexesErnest Glukhov, Sandor Vajda, Dima KozakovJournal of Molecular Biology|March 26, 2025
E-FTMap: A Protein Structure Based Pharmacophore Identification Server for Guiding Fragment ExpansionOmeir Khan, George Jones, Dima Kozakov, et al.Bioinformatics (Oxford, England)|July 2, 2008
Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functionsDavid W Ritchie, Dima Kozakov, Sandor VajdaMethods in Molecular Biology (Clifton, N.J.)|December 21, 2011
Analysis of protein binding sites by computational solvent mappingDavid R Hall, Dima Kozakov, Sandor VajdaPageof 23